phylo2vec.utils.newick.create_label_mapping

phylo2vec.utils.newick.create_label_mapping(newick)

Create an integer-taxon label mapping (label_mapping) from a string-based newick (where leaves are strings) and produce a mapped integer-based newick (where leaves are integers) this also remove annotations pertaining to parent nodes

Parameters:

newick (str) – Newick with string labels

Returns:

• newick_int (str) – Newick with integer labels

• label_mapping (Dict[int, str]) – Mapping of leaf labels (as integers) to taxa