phylo2vec.stats.incidence

phylo2vec.stats.incidence(vector, format='coo')

Compute the incidence matrix of a Phylo2Vec vector.

Parameters:

• vector (numpy.ndarray) – Phylo2Vec vector (ndim == 1)

• format (str, optional) – Format of the incidence matrix, by default “coo”

Returns:

Incidence matrix in the specified format

Return type:

numpy.ndarray or List[List[int], List[int], List[int]] or Dict[Tuple[int, int], int]